skip to main content


Search for: All records

Creators/Authors contains: "Smith, Samantha"

Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).
What is a DOI Number?

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

  1. Abstract Background

    Developing genomic resources for a diverse range of species is an important step towards understanding the mechanisms underlying complex traits. Specifically, organisms that exhibit unique and accessible phenotypes-of-interest allow researchers to address questions that may be ill-suited to traditional model organisms. We sequenced the genome and transcriptome of Alston’s singing mouse (Scotinomys teguina), an emerging model for social cognition and vocal communication. In addition to producing advertisement songs used for mate attraction and male-male competition, these rodents are diurnal, live at high-altitudes, and are obligate insectivores, providing opportunities to explore diverse physiological, ecological, and evolutionary questions.

    Results

    Using PromethION, Illumina, and PacBio sequencing, we produced an annotated genome and transcriptome, which were validated using gene expression and functional enrichment analyses. To assess the usefulness of our assemblies, we performed single nuclei sequencing on cells of the orofacial motor cortex, a brain region implicated in song coordination, identifying 12 cell types.

    Conclusions

    These resources will provide the opportunity to identify the molecular basis of complex traits in singing mice as well as to contribute data that can be used for large-scale comparative analyses.

     
    more » « less
  2. Abstract

    Sexual displays are some of the most dramatic and varied behaviors that have been documented. The elaboration of such behaviors often relies on the modification of existing morphology. To understand how display elaboration arises, we analyzed the laryngeal anatomy of three species of mice that vary in the presence and complexity of their vocal displays. Mice and rats have a specialized larynx that enables them to produce both low‐frequency “audible” sounds, perhaps using vocal fold vibration, as well as distinct mechanisms that are thought to enable higher frequency sounds, such as vocal membrane vibration and intralaryngeal whistles. These mechanisms rely on different structures within the larynx. Using histology, we characterized laryngeal anatomy in Alston's singing mouse (Scotinomys teguina), the northern pygmy mouse (Baiomys taylori), and the laboratory mouse (Mus musculus), which produce different types of vocalizations. We found evidence of a vocal membrane in all species, as well as species differences in vocal fold and ventral pouch size. Presence of a vocal membrane in these three species, which are not known to use vocal membrane vibration, suggests that this structure may be widespread among muroid rodents. An expanded ventral pouch in singing and pygmy mice suggests that these mice may use an intralaryngeal whistle to produce their advertisement songs, and that an expanded ventral pouch may enable lower frequencies than laboratory mouse whistle‐produced sounds. Variation in the laryngeal anatomy of rodents fits into a larger pattern across terrestrial vertebrates, where the development and modification of vocal membranes and pouches, or air sacs, are common mechanisms by which vocalizations diversify. Understanding variation in the functional anatomy of relevant organs is the first step in understanding how morphological changes enable novel displays.

     
    more » « less